MtDNA U5b1 - Versionsgeschichte

ChrisR: /* Background information */

2012-03-22T11:47:51Z

Background information

← Nächstältere Version		Version vom 22. März 2012, 13:47 Uhr
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	**************** mögliche Untergruppen: U5b1b1a, U5b1b1a1, U5b1b1b		**************** mögliche Untergruppen: U5b1b1a, U5b1b1a1, U5b1b1b

	== Background information ==		== Background information & papers ==

	* [https://en.wikipedia.org/wiki/Haplogroup_U_%28mtDNA%29#Haplogroup_U5 Haplogroup U5 (mtDNA)]: among the oldest mtDNA haplogroups. Estimated 50,000 - 60,500 YBP. Approximately 11% of total Europeans. U5b1 around 18000 years ago. U5b1b has been found in Fulbe and Papel people in Guinea-Bissau and Yakuts people of northeastern Siberia and also from from Saami (!) to Berbers. It arose around 11000 years ago.		* [https://en.wikipedia.org/wiki/Haplogroup_U_%28mtDNA%29#Haplogroup_U5 Haplogroup U5 (mtDNA)]: among the oldest mtDNA haplogroups. Estimated 50,000 - 60,500 YBP. Approximately 11% of total Europeans. U5b1 around 18000 years ago. U5b1b has been found in Fulbe and Papel people in Guinea-Bissau and Yakuts people of northeastern Siberia and also from from Saami (!) to Berbers. It arose around 11000 years ago.
			* Fu, Rudan, Pääbo, Krause 2012: Complete Mitochondrial Genomes Reveal Neolithic Expansion into Europe, PLoS ONE 7(3): e32473. [http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0032473 doi:10.1371/journal.pone.0032473] [http://dienekes.blogspot.it/2012/03/neolithic-expansions-how-european.html Dienekes] - From 23 pre-Neolithic persons 83% had mtDNA HG U (61% U5)
			* Gignoux et al. 2011: Rapid, global demographic expansions after the origins of agriculture, PNAS [http://www.pnas.org/content/108/15/6044.short doi:10.1073/pnas.0914274108] [http://dienekes.blogspot.it/2011/04/global-demographic-expansions-followed.html Dienekes] - (maternal) population continuity from Mesolithic ancestry (contemporary western Europeans account for ≈15% of mtDNA U5a, U5b1, V, and 3H)
			* Malyarchuck et al. 2010: The Peopling of Europe from the Mitochondrial Haplogroup U5 Perspective, PLoS ONE [http://www.plosone.org/article/info:doi/10.1371/journal.pone.0010285 doi:10.1371/journal.pone.0010285] [http://dienekes.blogspot.it/2010/04/origin-and-dispersal-of-mtdna.html Dienekes] - U5b gene flow from central to eastern Europe more intense after the LGM, coalescence time estimate ~20–24 ky for U5b
			* Montiel-Sosa et al. 2005: Differences of sperm motility in mitochondrial DNA haplogroupnext term U sublineages, Gene Volume 368, 1 March 2006, Pages 21–27, [http://www.sciencedirect.com/science/article/pii/S0378111905005913 doi.org/10.1016/j.gene.2005.09.015] [http://dienekes.blogspot.it/2005/12/sperm-motility-in-mtdna-haplogroup-u.html Dienekes]

	[[Kategorie:Genetic Genealogy]]		[[Kategorie:Genetic Genealogy]]
	[[Kategorie:English]]		[[Kategorie:English]]

ChrisR: /* Background information */

2012-03-22T11:17:04Z

Background information

← Nächstältere Version		Version vom 22. März 2012, 13:17 Uhr
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	[[Kategorie:Genetic Genealogy]]		[[Kategorie:Genetic Genealogy]]
			[[Kategorie:English]]

ChrisR: /* Background information */

2012-03-16T15:35:38Z

Background information

← Nächstältere Version		Version vom 16. März 2012, 17:35 Uhr
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	* [https://en.wikipedia.org/wiki/Haplogroup_U_%28mtDNA%29#Haplogroup_U5 Haplogroup U5 (mtDNA)]: among the oldest mtDNA haplogroups. Estimated 50,000 - 60,500 YBP. Approximately 11% of total Europeans. U5b1 around 18000 years ago. U5b1b has been found in Fulbe and Papel people in Guinea-Bissau and Yakuts people of northeastern Siberia and also from from Saami (!) to Berbers. It arose around 11000 years ago.		* [https://en.wikipedia.org/wiki/Haplogroup_U_%28mtDNA%29#Haplogroup_U5 Haplogroup U5 (mtDNA)]: among the oldest mtDNA haplogroups. Estimated 50,000 - 60,500 YBP. Approximately 11% of total Europeans. U5b1 around 18000 years ago. U5b1b has been found in Fulbe and Papel people in Guinea-Bissau and Yakuts people of northeastern Siberia and also from from Saami (!) to Berbers. It arose around 11000 years ago.

	[[Kategorie:~~DNA~~]]		[[Kategorie:Genetic Genealogy]]

ChrisR: /* Definierende SNP-Mutationen */

2012-03-03T03:25:18Z

Definierende SNP-Mutationen

← Nächstältere Version		Version vom 3. März 2012, 05:25 Uhr
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	*************** Geschwister: U5b1b2		*************** Geschwister: U5b1b2
	**************** mögliche Untergruppen: U5b1b1a, U5b1b1a1, U5b1b1b		**************** mögliche Untergruppen: U5b1b1a, U5b1b1a1, U5b1b1b

			== Background information ==

			* [https://en.wikipedia.org/wiki/Haplogroup_U_%28mtDNA%29#Haplogroup_U5 Haplogroup U5 (mtDNA)]: among the oldest mtDNA haplogroups. Estimated 50,000 - 60,500 YBP. Approximately 11% of total Europeans. U5b1 around 18000 years ago. U5b1b has been found in Fulbe and Papel people in Guinea-Bissau and Yakuts people of northeastern Siberia and also from from Saami (!) to Berbers. It arose around 11000 years ago.

	[[Kategorie:DNA]]		[[Kategorie:DNA]]

ChrisR: /* Definierende SNP-Mutationen */

2012-03-03T01:24:32Z

Definierende SNP-Mutationen

← Nächstältere Version		Version vom 3. März 2012, 03:24 Uhr
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	*************** Geschwister: U5b1b2		*************** Geschwister: U5b1b2
	**************** mögliche Untergruppen: U5b1b1a, U5b1b1a1, U5b1b1b		**************** mögliche Untergruppen: U5b1b1a, U5b1b1a1, U5b1b1b

			[[Kategorie:DNA]]

ChrisR am 23. September 2011 um 14:05 Uhr

2011-09-23T14:05:24Z

← Nächstältere Version		Version vom 23. September 2011, 16:05 Uhr
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	Laut PhyloTree.org mtDNA tree Build 12 (20 Jul 2011) [http://www.phylotree.org/tree/main.htm 1], [http://www.phylotree.org/tree/subtree_R.htm 2]. Coding region mutations (np 577-16023) in Standardschrift; control region mutations (np 16024-576) in kursiv.		Laut PhyloTree.org mtDNA tree Build 12 (20 Jul 2011) [http://www.phylotree.org/tree/main.htm 1], [http://www.phylotree.org/tree/subtree_R.htm 2]. Coding region mutations (np 577-16023) in Standardschrift; control region mutations (np 16024-576) in kursiv.

	* mt-MRCA, Mitochondrial Eve, mtDNA-Eve
	********* [[mtDNA R\|R: 12705 ''16223'']]		********* [[mtDNA R\|R: 12705 ''16223'']]
	********** U: 11467 12308 12372		********** U: 11467 12308 12372
Zeile 9:		Zeile 7:
	************ U5b: ''150 '' 7768 14182		************ U5b: ''150 '' 7768 14182
	************* U5b1: 5656		************* U5b1: 5656

			Laut 23andMe Labs Haplogroup Tree Mutation Mapper (Brian Naughton, 23 Sep 2011) [https://www.23andme.com/you/labs/haplogroup_tree_mut_mapper/ 3]. Defining mutations: variant call rCRS anc:
			********* [[mtDNA R\|R: rs2854122 12705 C; rs2853513 16223 C]]
			********** U: rs2853493 G 11467 A; rs2853498 G 12308 A; rs2853499 A 12372 G
			*********** U5: rs2854131 C 3197 T; rs2853825 A 9477 G; i3001202 C 13617 T; rs2853503 13617 T; rs2857290 T 16270 C; i3001781 16270 C; i3001782 T 16270 C
			************ U5b: i3001901 T 150 C; rs41534044 G 7768 A; i3000652 G 7768 A; i3001263 C 14182 T
			************* U5b1: i1000002 G 5656 A; i3001475 G 5656 A
			************* subU5b1_01: rs28693675 16189 T; i4000587 16189 T

	== Subclade U5b1b1 ==		== Subclade U5b1b1 ==
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	Laut 23andMe Labs Haplogroup Tree Mutation Mapper (Brian Naughton, 23 Sep 2011) [https://www.23andme.com/you/labs/haplogroup_tree_mut_mapper/ 3]. Defining mutations: variant call rCRS anc:		Laut 23andMe Labs Haplogroup Tree Mutation Mapper (Brian Naughton, 23 Sep 2011) [https://www.23andme.com/you/labs/haplogroup_tree_mut_mapper/ 3]. Defining mutations: variant call rCRS anc:
	********* R: rs2854122 C 12705 C; rs2853513 C 16223 C
	********** U: rs2853493 G 11467 A; rs2853498 G 12308 A; rs2853499 A 12372 G
	*********** U5: rs2854131 C 3197 T; rs2853825 A 9477 G; i3001202 C 13617 T; rs2853503 13617 T; rs2857290 T 16270 C; i3001781 16270 C; i3001782 T 16270 C
	************ U5b: i3001901 T 150 C; rs41534044 G 7768 A; i3000652 G 7768 A; i3001263 C 14182 T
	************* U5b1: i1000002 G 5656 A; i3001475 G 5656 A
	************* subU5b1_01: rs28693675 16189 T; i4000587 16189 T
	************** U5b1b: i3001126 A 12618 G		************** U5b1b: i3001126 A 12618 G
	*************** U5b1b1: i3000617 G 7385 A; i3000968 C 10927 T		*************** U5b1b1: i3000617 G 7385 A; i3000968 C 10927 T
	*************** Geschwister: U5b1b2		*************** Geschwister: U5b1b2
	**************** mögliche Untergruppen: U5b1b1a, U5b1b1a1, U5b1b1b		**************** mögliche Untergruppen: U5b1b1a, U5b1b1a1, U5b1b1b

ChrisR: /* Definierende SNP-Mutationen */

2011-09-23T14:02:13Z

Definierende SNP-Mutationen

← Nächstältere Version		Version vom 23. September 2011, 16:02 Uhr
Zeile 4:		Zeile 4:

	* mt-MRCA, Mitochondrial Eve, mtDNA-Eve		* mt-MRCA, Mitochondrial Eve, mtDNA-Eve
	** L1-6: ''146 182! '' 4312 10664 10915 11914 13276 ''16230''		********* [[mtDNA R\|R: 12705 ''16223'']]
	*** L2-6: ''152 '' 2758 2885 7146 8468
	**** L2'3'4'6: ''195 247 '' 825A 8655 10688 10810 13105 13506 15301! ''16129 16187 16189 ''
	***** L3'4'6: 4104 7521
	****** L3'4: ''182 '' 3594 7256 13650 ''16278''
	******* L3: 769 1018 ''16311''
	******** N: 8701 9540 10398 10873 15301
	********* R: 12705 ''16223''
	********** U: 11467 12308 12372		********** U: 11467 12308 12372
	*********** U5: 3197 9477 13617 ''16192 16270''		*********** U5: 3197 9477 13617 ''16192 16270''

ChrisR: /* Definierende SNP-Mutationen */

2011-09-23T13:41:33Z

Definierende SNP-Mutationen

← Nächstältere Version		Version vom 23. September 2011, 15:41 Uhr
Zeile 25:		Zeile 25:
	************** U5b1b: 12618 - Example accessions: GU296644		************** U5b1b: 12618 - Example accessions: GU296644
	*************** U5b1b1: 7385 10927 - Example accessions: GU296566		*************** U5b1b1: 7385 10927 - Example accessions: GU296566
			*************** Geschwister: U5b1b2
			**************** mögliche Untergruppen: U5b1b1a, U5b1b1a1, U5b1b1a1a, U5b1b1d, U5b1b1b, U5b1b1e


	Laut 23andMe Labs Haplogroup Tree Mutation Mapper (Brian Naughton, 23 Sep 2011) [https://www.23andme.com/you/labs/haplogroup_tree_mut_mapper/ 3]. Defining mutations: variant call rCRS anc:		Laut 23andMe Labs Haplogroup Tree Mutation Mapper (Brian Naughton, 23 Sep 2011) [https://www.23andme.com/you/labs/haplogroup_tree_mut_mapper/ 3]. Defining mutations: variant call rCRS anc:
Zeile 35:		Zeile 38:
	************** U5b1b: i3001126 A 12618 G		************** U5b1b: i3001126 A 12618 G
	*************** U5b1b1: i3000617 G 7385 A; i3000968 C 10927 T		*************** U5b1b1: i3000617 G 7385 A; i3000968 C 10927 T
			*************** Geschwister: U5b1b2
			**************** mögliche Untergruppen: U5b1b1a, U5b1b1a1, U5b1b1b

ChrisR: Die Seite wurde neu angelegt: „== Definierende SNP-Mutationen == Laut PhyloTree.org mtDNA tree Build 12 (20 Jul 2011) [http://www.phylotree.org/tree/main.htm 1], [http://www.phylotree.org/tree…“

2011-09-23T13:16:32Z

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Neue Seite

== Definierende SNP-Mutationen ==

Laut PhyloTree.org mtDNA tree Build 12 (20 Jul 2011) [http://www.phylotree.org/tree/main.htm 1], [http://www.phylotree.org/tree/subtree_R.htm 2]. Coding region mutations (np 577-16023) in Standardschrift; control region mutations (np 16024-576) in kursiv.

* mt-MRCA, Mitochondrial Eve, mtDNA-Eve
** L1-6: ''146 182! '' 4312 10664 10915 11914 13276 ''16230''
*** L2-6: ''152 '' 2758 2885 7146 8468
**** L2'3'4'6: ''195 247 '' 825A 8655 10688 10810 13105 13506 15301! ''16129 16187 16189 ''
***** L3'4'6: 4104 7521
****** L3'4: ''182 '' 3594 7256 13650 ''16278''
******* L3: 769 1018 ''16311''
******** N: 8701 9540 10398 10873 15301
********* R: 12705 ''16223''
********** U: 11467 12308 12372
*********** U5: 3197 9477 13617 ''16192 16270''
************ U5b: ''150 '' 7768 14182
************* U5b1: 5656

== Subclade U5b1b1 ==

=== Definierende SNP-Mutationen ===

Laut PhyloTree.org mtDNA tree Build 12 (20 Jul 2011) [http://www.phylotree.org/tree/subtree_R.htm 2]. Coding region mutations (np 577-16023) in Standardschrift; control region mutations (np 16024-576) in kursiv.

************** U5b1b: 12618 - Example accessions: GU296644
*************** U5b1b1: 7385 10927 - Example accessions: GU296566

Laut 23andMe Labs Haplogroup Tree Mutation Mapper (Brian Naughton, 23 Sep 2011) [https://www.23andme.com/you/labs/haplogroup_tree_mut_mapper/ 3]. Defining mutations: variant call rCRS anc:
********* R: rs2854122 C 12705 C; rs2853513 C 16223 C
********** U: rs2853493 G 11467 A; rs2853498 G 12308 A; rs2853499 A 12372 G
*********** U5: rs2854131 C 3197 T; rs2853825 A 9477 G; i3001202 C 13617 T; rs2853503 13617 T; rs2857290 T 16270 C; i3001781 16270 C; i3001782 T 16270 C
************ U5b: i3001901 T 150 C; rs41534044 G 7768 A; i3000652 G 7768 A; i3001263 C 14182 T
************* U5b1: i1000002 G 5656 A; i3001475 G 5656 A
************* subU5b1_01: rs28693675 16189 T; i4000587 16189 T
************** U5b1b: i3001126 A 12618 G
*************** U5b1b1: i3000617 G 7385 A; i3000968 C 10927 T